PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_13371
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LSD
Protein Properties Length: 203aa    MW: 21903.6 Da    PI: 8.7862
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_13371genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD125.81.8e-08731125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCr lL+Y     +VRCa+C+t+
  PEQU_13371  7 CSGCRSLLRYEGVTNNVRCAICNTI 31
                ***********************97 PP

2zf-LSD143.64.9e-144670125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggC+ lL+Y rGA+sVRC++C+t+
  PEQU_13371 46 CGGCHRLLMYARGATSVRCSCCNTI 70
                ***********************97 PP

3zf-LSD133.95.2e-11114138125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 C +C+t+L YP GAp V+CalC+++
  PEQU_13371 114 CAQCHTMLVYPHGAPCVKCALCNFI 138
                 ***********************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.2E-10533IPR005735Zinc finger, LSD1-type
PfamPF069435.0E-6731IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:2.20.25.1002.1E-42258IPR023407Ribosomal protein S27e, zinc-binding domain
TIGRFAMsTIGR010534.6E-144371IPR005735Zinc finger, LSD1-type
PfamPF069433.6E-124670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.4E-9111140IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-10114138IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MPGELVCSGC RSLLRYEGVT NNVRCAICNT ITPVFSQPQD AAQLVCGGCH RLLMYARGAT  60
SVRCSCCNTI NQARSVQLEI LKKVFRHLQT SLLAHNISIK SNAQKANQLA HVNCAQCHTM  120
LVYPHGAPCV KCALCNFITR VAVNSGMMPI QVNRPSGAAP SLASTSAPSP NSNNQTVVIE  180
NPMSIDQSGK LVLSLFFILI LQF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A151TKM29e-57A0A151TKM2_CAJCA; Uncharacterized protein
STRINGGLYMA08G13630.13e-53(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.82e-45LSD family protein